PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04448.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 287aa    MW: 32573.8 Da    PI: 5.0309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04448.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.42e-3861363128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              +GfrF Ptd el++++Lk+k++gk+  +++ i+ev  + +eP +Lp+  ++k+++  wyf s+++ ++++++ ++r+t sg+Wk t
  Rsa1.0_04448.1_g00004.1   6 VGFRFCPTDVELINYFLKNKIQGKSWLVDDKIREVSTCGHEPASLPAlsMIKTKDPVWYFISPKEYTSPKKNVTKRTTPSGFWKVT 91 
                              7************************999999***************4458888999****************************** PP

                      NAM  87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+d++v+++   +g ++g+kktLv+++g+++++ +t W+mhey++
  Rsa1.0_04448.1_g00004.1  92 GNDRKVKEEkrrNGVVIGIKKTLVYHEGNSSNAARTPWTMHEYHI 136
                              *******986667777***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.6164154IPR003441NAC domain
SuperFamilySSF1019411.22E-445154IPR003441NAC domain
PfamPF023652.0E-236136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATSLVGFRF CPTDVELINY FLKNKIQGKS WLVDDKIREV STCGHEPASL PALSMIKTKD  60
PVWYFISPKE YTSPKKNVTK RTTPSGFWKV TGNDRKVKEE KRRNGVVIGI KKTLVYHEGN  120
SSNAARTPWT MHEYHITCLP YVNQSYVICK IFYKGNVEDI PSCSNSSEPS QYLLINDSNT  180
VRATNKPPQV EQAGQESLSG FSANDVIMLM NEQEDLCPWD ALCPIPNTLF IDNNYNTNVQ  240
LQAPCLAQDD DENLGAFTQI EYLCTDHQEF ITQENSEEYM INGLCLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-21715420165NO APICAL MERISTEM PROTEIN
1ut4_B6e-21715420165NO APICAL MERISTEM PROTEIN
1ut7_A6e-21715420165NO APICAL MERISTEM PROTEIN
1ut7_B6e-21715420165NO APICAL MERISTEM PROTEIN
3swm_A6e-21715423168NAC domain-containing protein 19
3swm_B6e-21715423168NAC domain-containing protein 19
3swm_C6e-21715423168NAC domain-containing protein 19
3swm_D6e-21715423168NAC domain-containing protein 19
3swp_A6e-21715423168NAC domain-containing protein 19
3swp_B6e-21715423168NAC domain-containing protein 19
3swp_C6e-21715423168NAC domain-containing protein 19
3swp_D6e-21715423168NAC domain-containing protein 19
4dul_A6e-21715420165NAC domain-containing protein 19
4dul_B6e-21715420165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111358.11e-172PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1261e-93NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A078F6521e-174A0A078F652_BRANA; BnaCnng01530D protein
TrEMBLA0A0D3DZV01e-174A0A0D3DZV0_BRAOL; Uncharacterized protein
STRINGBra036328.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.16e-95NAC domain containing protein 69